Bojing Jia

PDFs support 3D models like CAD files. Is there a possibility of exporting the 3D figure as a 3D-PDF?

Read in arbitrary coordinate set (x, y, z)

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Is it possible to read in an array of `[x, y, z]` coordinates for ProDy analysis? I have tried `parsePDB(xyz_array_)` but to no avail, it throws a TypeError: `TypeError: can...

[FEA] Multi-GPU support for cupyimg

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This is a question migrated over from `cupyimg`: will there be multi-GPU support for GPU-enabled `scikit-image` functions? `phase_cross_correlation` and `affine_transform` are two functions I have in mind. These are probably...

Hi Prabhu, Thanks for writing this tutorial on how to install Mayavi. It's a lot more difficult than I imagined. I followed your steps, using conda to install Mayavi, but...

Unable to accomodate large k-mers

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To support finding long k-mers, I tried re-installing in the build folder following instructions: ``` rm -Rf CMake* && cmake -DKSIZE_LIST="32 64 92" .. && make ``` where I chose...

In some sense, knowing all coordinates `(x_i, y_i, z_i)` of an `N` residue protein generates an `N x N` distance matrix. Then there are `N^2` distance relations known between all...

The current limit of _k_ is between 3-32 inclusive. Is it possible to extend this ie. 40? 50?

[Improving Documentation] Contributing inspectable notebook for imputation on custom dataset

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Thank you for this amazing resource! Like others have raised in other issues, it seems: - documentation is either incomplete or not up-to-date - users express difficulty adapting own dataset...

Some dependencies may not work with Windows machines, according to user email from 06/02/2022.

Enable streaming of subsets of data ie. filter by diploid `num_chr = 2` cells of celltype `Astro` in FOV `FOV==50`.