Andrzej Zielezinski

Will Jellyfish support protein sequences?

1

Do you have plans for supporting protein sequences?

Problem with custom path to taxdump.tar.gz

1

Hi, I'm trying to specify the custom path for the `taxdump.tar.gz` file. The file successfully downloads to the path I specify, however I get an error when ete3 tries to...

Can OrthoFinder handle tens of thousands of genomes?

1

OrthoFinder needs BLAST/Diamond output as multiple pairwise comparison files stored in a single directory. This is problematic for a large number of genomes - for 50000 genomes this would result...

Too many FASTA files with spacers

2

Hi, I'm encountering an issue while attempting to run the command: `spacepharer easy-predict spacers/*.fna targetSetDB predictions.tsv temp/` I have approximately 35,000 FASTA files containing spacers, each corresponding to a different...