Azhar Khandekar

icon location Bioinformatics PhD student jointly at UC San Diego and at NCI

Results 3 comments of Azhar Khandekar

Non-integer copy numbers

Hi, thanks for bringing up this point! In the past, I have rounded to the nearest whole number (for A and B alleles) and then TCN = A + B....

Non-integer copy numbers

Hi Nicolas, thanks for the info, this is very interesting information. For your first point, I agree that round(copyNumber) may be better than round(A) + round(B), as shown by your...

Running tool with custom CNV calls

Hi @kbrar4013, Thanks for reaching out and sorry for the delay. If you are still having issues, can you please attach copynumber.caveman.csv (or at least the first few lines)? Thanks,...