Lakshitha Perera

Hello, I have the exact same issue. In my case, I have my VCFs, gVCFs and the index files created but it fails at creating the "vcf_stats_repot". I have given...

Hello @lucasbrambrink, Thank you very much for the response. I am attaching the log file herewith. THe command I used was: singularity run -B /usr/lib/locale/:/usr/lib/locale/ deepvariant_1.6.1.sif /opt/deepvariant/bin/run_deepvariant --model_type=WGS --ref="{rest_path}/tools/DeepVariant/ref_genomes/GCA_000001405.15_GRCh38_no_alt_analysis_set.fasta" --reads="{rest_path}/MiniMap_SAM_BAM/11741-KA-0004.sorted.bam"...

Hi Egor, Thank you very much for your response. This is wonderful news and would love to test the preliminary version of the workflow. I will reach out via email...