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                                            Anna Yeaton

10x use case

Hi Alicia, Thanks for your comments! To address your first question, if there are barcodes that are the same across bed files, the user can input different names for each...

getCounts with 10X Cellranger output

Hi @x811zou, I also wanted to use chromVAR for 10x scATAC-Seq. I used the 10x fragments bed file and slightly changed some functions in chromVAR involved in reading fragments from...