Aya Alaa

I'm interested in working on this issue.... the solution that I'm thinking about is adding a topology attribute class BIOMT to the `topologyattr` module, so it will hold the assembly...

> > The mission of deciding how an attribute will be guessed will be carried out by the > > corresponding attribute guesser method related to each class. I think...

I have added a dependency diagrams to the issue for declaration, you can also see my project updates on my personal blog https://sites.google.com/pharma.asu.edu.eg/aya-gsoc/home

> Thank you @aya9aladdin. Is your diagram reflecting what you plan on going, or is it what we currently have in the code? it's more of a reflection of what...

> @aya9aladdin I recommend that you push your changes often. Do not wait for the code to be finished. By pushing often, we get to see your progress, we get...

I have made some updates: 1- I removed all `mass` and `type` guessing from parsers and transferred it to take place inside the `universe` initiation, so mass and atom types...

I'm just more concerned with the logic than the documentation at the moment that's why it's not very accurate

I updated some files as follows: 1- I modified `guess_bonds` inside the universe to pass a `context` to it (honestly I didn't get why bond guessing happens inside the `AtomGroup`,...

> What you should really focus on now, is to check that your code does not change the current behaviour. If you create a universe with the code in your...

Hello everyone today I finished any updates to the code in this pull request. I ensured that the only test that fails is the one expected to do so. The...