awgymer
awgymer
The profane words dictionary contains both `wank` and `fuck` and also `fucker` and `wanker`, however `pf.censor_word()` correctly censors `fucks` and `wanks` but not `fuckers` or `wankers`. This seems counter intuitive...
Just looking through the data and after running `update_db` and inspecting the whole dataset I discovered that there are three plays with `play_id = 2323` `game_id = 2000_11_OAK_DEN` where the...
### Description of the bug When running `nf-core modules lint` on a module which contains a label not starting `process_` an `AttributeError` is raised and the process errors out. It...
I am trying to use a `MaterializedView` to hold some aggregated queries from one of my model tables. Everything seems fine, however when I try to use the result like...
Currently the official docs have just a [small footnote](https://www.nextflow.io/docs/latest/operator.html?highlight=groupkey#grouptuple) at the end of the section on `groupTuple`. It would be useful to have a concrete example of the input/output of...
Adding a new module for nanomonsv/parse. This is an SV caller for tumour/normal data from ONT sequencing. I have opened a PR for new test data https://github.com/nf-core/test-datasets/pull/664 Tests are passing...
Add the `parse` command from `nanomonsv`. I will also add the `get` command and other downstream commands after. ### Is there an existing module for this? - [X] I have...
### Description of the bug Previously tooling supported modules installed from remote repos other than the `nf-core/modules` Github. Other remote repos still work but only if `nf-core` is kept as...
### Description of feature This is a current (possibly permanent) limitation of subworkflows. This means you cannot define a subworkflow in an `nf-core` structured repo which uses `nf-core` modules directly....
### Description of the bug Not entirely sure if this is a bug, or misuse of the tools. When running `nf-core modules info` and trying to get the information of...