aureliendejode

Ok good. My next question is there a recommend depth of coverage for polishing ? More precisely a maximum depth of coverage because I have close to 500X of Illumina...

Hello, Here is a part of the .gff file. Thanks for your help. ##gff-version 3 ##pacbio-variant-version 2.1 ##date Fri Jul 16 16:48:15 2021 ##feature-ontology http://song.cvs.sourceforge.net/*checkout*/song/ontology/sofa.obo?revision=1.12 ##source GenomicConsensus 2.3.3 ##source-commandline /sw/bioinfo/SMRT/7.0.1/rackham/install/smrtlink-release_7.0.1.66975/bundles/smrttools/install/smrttools-release_7.0.1.66768/private/pacbio/pythonpkgs/GenomicC...

Hello Arang, I am in the final steps of the assembly for my genome before scaffolding and I'd really like to get going with merfin. Any news about this ?...

Hello Rémi, Thanks for this I was able to fetch the contigs but MitoFinder in the raw CANU assembly. My guess is that it was probably eliminated by purge_dups because...

Hello Rémi, I was wondering if you would have any insights about why MitoFinder was unable to circularize the mitochondrial dna ? Best Aurélien

Hi, Thanks for this. I have produce the alignments with minimap2 and visualizing them using IGV. I am not sure how to check if the gaps are properly closed. Here...

Hello, In the validation-report.json, what are the meaning of the different terms ? (I pasted one line of the file at the bottom of the message. In the bed file...

Thanks, I used those 2 options and it worked.

There are not many genomes of closely relative... but as an example Nematostella vectensis has ~19 000 protein coding genes and ~38 000 genes and the annotation was conducted with...

Great, thanks for your insights on this!