Arda Söylev

Hello, I want to use jellyfish within my C code; I'm wondering if you have a C wrapper for your code? Thanks,

SV simulation

6

Hello, Just to clarify things, I have a couple of questions: - if I set "NUMBER_Haploid" parameter to 2, does the simulator create diploid SVs, do I understand correctly? -...

Hello, I'm trying to use the library in my C++ code. I copied "/include/spoa" into my project folder and compiled the "libspoa.a". When I add your sample code segment into...

LASeR issue

1

Hello, I followed the step that you suggested but when generating reads from the fasta files, I get an error after the following command: `VISOR LASeR -g chr1_t2t.fa -s sims_small/...

Assertion issue

3

Hi, I'm trying to align an assembly to minigraph cactus using the command below. However I get the following error: GraphAligner -g hprc-v1.1-mc-chm13.gfa -f XXX.fasta.gz -a {output} -t 24 --...

unmapped reads

1

Hello, I'm wondering if there is an option to output unmapped reads? Thank you, Arda

optimum parameters for ONT reads

6

Hi, I'm trying to use the library to generate consensus of ONT reads for multiple clusters of reads. Each cluster has around 10 - 30 reads. However, I'm not sure...

exception

1

Hi, trying to use Kestrel with the command below. But after 2-3 days of processing for 5x coverage dataset, I get the error below. Any idea? Thanks... **java -Xmx16G -jar...

Hello, I'm trying to run SVision with default settings, but I get the following error. I checked the md5sum of the cnn model and I there seems to be no...

Illegal instruction: 4

5

Thanks for this tool, however I have some issues in using this. First I tried `pip install pywfa` and I successfully imported the package but when I called **a =...