astulaaa

Hello, I'm running beagle 4.1 and I'm getting this: WARNING: Imputation of ungenotyped markers will not be performed. Imputation requires the "gt=" argument and called genotypes. Exception in thread "main"...

Hello, I tested Manta (Conda version) on 4 WGS samples sequenced with MGI. I got an average number of SVs ~24,000 (PASS only) per sample, ***there were more homozygous INS...

missing 1 required positional argument: 'type_code'

5

Hello, I am getting this kind of error. The input files are hg38 based, db and and reference used were the same as the ones suggested in theGoogle Colab code....

Transcript annotation with gene names

1

### Description of feature First, thanks for sharing this wonderful resource! While the pipeline did not produce any major errors (though it appeared it was using more memory than assigned...

unclear NextSV issues

2

I am running NextSV2 and I get these issues in the log files: Traceback (most recent call last): File "/BiO/Access/home/bioapps/nextsv/nextsv2.py", line 553, in main() File "/BiO/Access/home/bioapps/nextsv/nextsv2.py", line 128, in main...