astarr97

Hi all, Sorry if this has been asked before; SCENIC seems like really cool technology but I am having trouble interpreting the results. What does relaxing the NES criterion to...

Strange TSS Enrichment Result

1

Hello, I am getting a very strange result for the plot of TSS enrichment (see attached image). I have tried other packages that do QC for ATACseq and they gave...

ATAC QC Filtering Tiling Regions

2

Hello, We did a very shallow sequencing run of ~8 million reads (before mapping etc.) spread over 20 bulk atac samples from 5 different cell types with 3 "treatments" each...