asmariyaz23 comments

Results 4 comments of


                                            asmariyaz23

"Wrapper passed wrong version number" error (Seurat v2)

Actually I am using Seurat which in turn runs your package, here is how I do it: ``` source('/Users/asma/FIt-SNE/fast_tsne.R', chdir=T) mtg.matrix

scRNA-seq: how to create the Ranked list?

Thank you for your replies. I am a newbie to analysis so excuse my naive questions. I have a curated a disease related gene list based on mutations (purely literature...

High memory and runtime requirements when adding scRNA-seq data

Hi @EliHei2 I am running the pipeline on dataset used in the Segger tutorial [here](https://elihei2.github.io/segger_dev/notebooks/segger_tutorial/). Does the pipeline version of running the 3 steps use scRNAseq embedding or tokenized version?...

High memory and runtime requirements when adding scRNA-seq data

Hello @EliHei2, I took another dataset with slimmed down scrnaseq annotated datasets and the training module is taking longer than 8 hours. Is this expected? I have pasted the 2...