Ashish Jain comments

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                                            Ashish Jain

Implement default selections

Is this feature has been updated? There is no "selected" argument in the latest CRAN update.

No MCC values in the filter_param plot

Hi @mdozmorov , thank you for your response. This data is more deeply sequenced than the previois one. One thing I want to ask is the TPR and FPR. Based...

No MCC values in the filter_param plot

I was actually carrying out the analysis using 25kbp resolution and as mentioned in the manual i proportionally increased the numChanges to 2500 (`filter_params(hic.list[[i]],numChanges = 2500)`). Is that too much...

No MCC values in the filter_param plot

Below is the plot I got using the `filter_params` function for chromosome 4. The resolution I used is 25kbp and `numChanges = 30`. It seems like the all the results...

No MCC values in the filter_param plot

This is how the contact data looks like for individual samples. The scale is log2. ![image](https://github.com/dozmorovlab/HiCcompare/assets/9519687/960d568c-605f-4e0b-9a48-499d727453ac) ![image](https://github.com/dozmorovlab/HiCcompare/assets/9519687/1f1c73b8-39a8-43e8-81b4-0f65f99c4f0a)

No MCC values in the filter_param plot

Thanks! I will look into that.

OmeZarrWrapper instead of OmeTiffWrapper ?

Hey @Artur-man, I am getting an error while adding the MultiImageWrapper object to the VitessceConfig object. Did you also encountered the same issue while running your code? vc