ashenflower

Encoding longer sequences

5

Is there already any implemented function to encode longer sequences (such as sequencing reads) using their k-mers embeddings?

Setting arbitrary bin size for WGS data

3

Hello, I need to compare different CNV callers before the segmentation step, and I would like for all of them to produce results on bins having the same size. Is...

Intrepreting Siamese Network using SHAP values

5

Hello, I developed a Siamese Neural Network having the following architecture: ``` Model: "siamese-network" __________________________________________________________________________________________________ Layer (type) Output Shape Param # Connected to ================================================================================================== input_2 (InputLayer) [(None, 691, 1)] 0...

### Discussed in https://github.com/aertslab/SCENIC/discussions/476 Originally posted by **ashenflower** January 21, 2025 Hello everyone, I’m new to pySCENIC and single-cell analysis, so I apologize in advance if my question seems naive....