Andreas Poehlmann

Closes #938 This adds a test with the current default ini configuration for bandit. Additionally this provides better error messages for `.bandit` ini config files and ensures that the ini...

### Describe the bug With a simple `.bandit` ini file like this: ```ini [bandit] level = 1 ``` bandit crashes with: ```python [main] INFO Using command line arg for selected...

To make it easier to add new spectrometers / new functionality the documentation needs improvement. It should contain some sort of step by step guide on howto add a new...

Installing seabreeze using "--without-cseabreeze" errors

6

Another bug, perhaps, the following installation command line produces an error that option "--without-cseabreeze" is not recognized. sudo pip install seabreeze[pyseabreeze] --no-use-pep517 --no-build-isolation --install-option="--without-cseabreeze" _Originally posted by @drmcnelson in https://github.com/ap--/python-seabreeze/issues/148#issuecomment-1017999038_

_Originally posted by @ap-- in https://github.com/ap--/python-seabreeze/discussions/132#discussioncomment-1353962_ ### Referenced from the discussion section: So to get this working you will need to implement the GPIO feature for the QEPro. It's not...

docs for installing python-seabreeze without cseabreeze need fixing

5

Currently I recommend this: ``` # install only pyseabreeze backend pip install seabreeze[pyseabreeze] --no-use-pep517 --no-build-isolation --install-option="--without-cseabreeze" ``` But because of https://github.com/pypa/pip/issues/1883 `--without-cseabreeze` gets passed down to other dependencies that have...

Transimitting raw commands to FLAME-NIR via RS232

1

Hello @ap-- ! I'm using FLAME-NIR Spectrometer. Is it possible to get PCB temperature via RS232 ? If yes how can I get it? Thanks. _Originally posted by @VladislavSu in...

Flame-S spectrometer readout timing issues

2

This issue is currently for the Flame-S, but might be true for many other spectrometers. ### spectrometer and system information model: Flame-S (**confirmed**) _supposed to be the same for USB-2000PLUS_...

See [this post on image.sc](https://forum.image.sc/t/exporting-annotations-of-qupath-project-as-instance-segmentations-using-python-imagewrite-error/64010?u=poehlmann) We could expose this functionality for the PathObjectHierarchy. We already support `to_geojson` and `to_ome_xml`. Could maybe offer `to_image` or `to_segmentation_mask`.

Test paquo against other QuPath versions

1

Generate a CI job to test against various QuPath versions. Low Priority.