Anton Kratz

how can I access the HIERARCHICAL structure identified by Louvain clustering?

7

I perform Louvain clustering on a graph like this: ```R library(igraph) df

**What I am trying to do and the problem**: I have a very large edgelist. I want to load the edgelist, build the undirected graph described by this edgelist, and...

I am trying to install cmappy following the instructions in this repo with the current anconda: `conda create --name my_cmapPy_env -c bioconda python=2.7.11 numpy=1.11.2 pandas=0.20.3 h5py=2.7.0 requests==2.13.0 cmappy ` ,...

[`to_ndex`] "description" field does not actually upload from ddot into NDEx

1

With the `to_ndex` function, it seems that the "description" field does not actually upload from ddot into NDEx. Or it uploads but NDEx does not accept it. The description field...

Where are the docs for the `llama` API?

3

I have difficulty finding docs for the `llama` API. Like, where is the meaning of the parameters defined (some like temperature and top_p I can guess but others...), how is...

For a research project, I am interested in exploring the effect of different prompts. The problem is, when I change the prompt even slightly, and I get a different result,...

(I posted a very similar question in the ollama repo. This question is how or if this can be achieved with the inference engine code that comes with code llama)....

node2vec is not deterministic, i.e. multiple runs will lead to different embeddings. I am working with to very similar, but not identical graphs. If I compare their embeddings, it is...

It would be awesome if the following could be made possible: the dataset which is loaded is specified in the URL. Purpose: we have a (very) large table / webpage(s)...

big black rectangle in SVG of MA plot, hex bin (screenshots incl)

1

I download the current hex bin MA plot as SVG and want to further work with this vector image in Inkscape to prepare a figure. Most of the plot is...