annawendler

Can you merge the main branch so that the get_mean method is already included here?

Regarding the first point: I can adapt the scripts so that all individuals that are infected (i.e. all individuals in Exposed, InfectedNoSymptoms, InfectedSymptoms, InfectedSevere (Hospitalized) and InfectedCritical (ICU)) are aggregated...

When we upload new case data, new rows are added to the table of the database. Although we only access the new entries from the frontend, the old entries don't...

The compartments we use in the model are described here https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010054 on page 3. For the visualization we aggregated the compartments as follows: | ESID compartments | Model compartments |...

You say it is possible to set the VOLUME_DIR in the .env file. This is not clear to me. Can you adapt the .env template?

Thank you. I created a folder with the specified three subfolders and set the VOLUME_DIR in .env.docker and backend/.env. When running "USER_ID=$(id -u) GROUP_ID=$(id -g) docker-compose -f docker-compose.dev.yml up -d"...

I think the issue was some interference with the old volumes which I could solve. Now, when I want to run "USER_ID=$(id -u) GROUP_ID=$(id -g) docker-compose -f docker-compose.dev.yml run --rm...

To compare run times we did 10 simulations from t0=0 until tmax=50 on the HPDA cluster on an exclusive node (see also examples/ide_secir_time.cpp) in Release mode. After storing the necessary...