Anna (Anya) Parker
Anna (Anya) Parker
It would be amazing if a Mamba.jl package replacing Conda with Mamba was available. Conda is terribly slow. Any progress on this since @SylvainCorlay? Many thanks in advance!
@isuruf this works amazingly! Thank you!
Just wanted to second that I also believe that this problem is not fixed in VScode. Strangely enough RCall works for me in the VS code debug console but not...
> Does this work? Any extra testing that should be done? Or is this ready to merge :) I tested on the monkeypox builds (old failing build and newest big...
Yes - we discovered it was actually due to not enough error handling in the `clock_tree` module. Due to too little data the calculation of the slope `self.clock_model['slope']` was inaccurate...
Hi- @huddlej @joverlee521 and @j23414 I hope I have understood this thread correctly - at the moment TreeTime supports rooting the tree on an outgroup - the outgroup needs to...
Thanks for flagging this! It seems to be a general bug that if a node sequence is not in the alignment treetime will print a warning and then crash instead...
Hi, @jameshadfield - so I think this error should be solved by the merged PR above: https://github.com/neherlab/treetime/pull/213 - in the augur and TreeTime `master`, or TreeTime version 0.9.4. But would...
For me this has quite unexpected behavior - I obtain the same error on the docker image (even with the newest `augur` and `treetime` versions) - but cannot seem to...
Oh so much better! Thanks @corneliusroemer