Ankur Naqib

No CellPhoneDB interacions found in this input.

3

Hi. I was running the following command: cellphonedb method statistical_analysis cellphonedb_meta.txt cellphonedb_countv2.txt --threads 30 --counts-data hgnc_symbol and I was getting the "No CellPhoneDB interacions found in this input." error. My...

Process failing during assign_tax step

1

Hi. Thank you for all the help so far. I have another project that surprisingly failed at the assign_tax step. This has never happened before and I am not sure...

Process failing in pb16S:class_tax

1

Hi, I am facing this error below in the classification step. Would you be able to please help me with this error? I am also attaching the nextflow log file...

error during the dada2 step

15

Hi, I am getting this error while running the dada2 step. Jan-01 19:59:47.133 [TaskFinalizer-8] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=pb16S:dada2_denoise (1); work-dir=/home/anaqib/Projects/GMCF_2378_Sona/work/db/fcd5418a72e8691f04adb9937191b1 error [nextflow.exception.ProcessFailedException]: Process `pb16S:dada2_denoise (1)`...

is it possible to get silva_nb.qza file?

5

Hi, Whenever we run a process, a folder named nb_tax is created. This folder contains the best_tax.qza file which basically translates to the best_taxonomy.tsv file (if I am not wrong!)....

Getting error in the GTDB step.

1

Hi, I am getting an error while running the GTDB step. I am attaching the log file. It seems like Prodigal failed due to an error "AttributeError: module 'numpy' has...

Error while setting up NF_MGIllumina_1.0.0

1

Hi. I have been using the SW_MGIllumina_2.0.3 for a long time now. I thought of updating to the NF_MGIllumina_1.0.0 also because I want to be able to use the parameter...

Dada2 conda v1.37

2

Hi Ben and Jordan. Just checking in to see if there is going to be a conda dada2 version 1.37 anytime soon. Thank you for all the work.