@nkit

Question regarding ad_map variable

1

Hi, Thanks to authors for creating such a necessary tool for the spatial transcriptomics field. I have doubt regarding the ad_map object, whether the sum of the probability of all...

LoadError: pca must have at least 3 components

1

Hello developers, Many thanks for creating Baysor for spatial transcriptomics field. I am using baysor for 2d cell segmentation for smFISH data for just few handful of genes. I get...

How to run NCEM for own spatial data?

3

Hi Anna, I want to use NCEM for other MERFISH data to compare with other tools that how the information differs. I followed your tutorial https://github.com/theislab/spatial_scog_workshop_2022/blob/main/ncem/tutorial_ncem.ipynb but I don't understand...

Question on computing niche cell type composition

1

Dear developers, I have a question regarding computing niche cell type composition from following tutorial. [https://scenvi.readthedocs.io/en/latest/tutorial/MOp_MERFISH_tutorial.html](tut) I have two spatial dataset where one has corresponding scRNAseq but another one does...