anke-king

This is how I calculate the rank: df['Rank']=np.log10(df.padj)*df.log2FoldChange df = df.sort_values('Rank', ascending = False).reset_index(drop = True) ranking = df[['gene_name', 'Rank']] and ranking.head(5) yields: gene_name Rank 0 mCherry_F 715.775855 1 ORF_032...

here is the entire error message: --------------------------------------------------------------------------- KeyError Traceback (most recent call last) Cell In[21], line 1 ----> 1 pre_res = gp.prerank(rnk = ranking, gene_sets = 'GO_Biological_Process_2021', seed = 6,...