andynkili

@Tushar-87 If numbers can be ignored, how can one know the direction of the trajectory? I thought those number labels were indicating the direction in the graph. Best, Andy

@KforKuma, I read that this error was provoked by warnings thrown by numba compilation and a solution was to add: ``` import warnings warnings.filterwarnings('ignore') ``` in the code. However, the...

same here

@atzatsos, @JamesHowie14 I am not part of the Dev Team but I had the same issue and the fix that I used is `write_phylo=T` when running infercnv. It will produce...

@yls2g13 I figured it was QC related, so I check my QC pipeline and some doublets were not filtered correctly as well as cells with mitochondrial genes (my previous treshold...

Another sample from the same dataset has that weird band (higlighted in my previous comment by the red box) of genes at the bottom of every cluster:  Those genes...

Dear developers, I also have the same issue where some cells have low score and it would help to compare the scores for all cell types from the reference, in...

@HarrietRB, It is not obvious from the [documentation ](https://satijalab.github.io/azimuth/articles/run_azimuth_tutorial.html) but after a fair bit of googling, I got the scores from `SeuratObject@assays$prediction.score.refMetadataUsedForAnnotation$data`. The [refMetadataUsedForAnnotation] is the name of metadata column...

@qianxuans, I am having also the same issue, when running azimuth inside a Rmd: ``` future_2

Additional information: the exact same command and data are producing also an error on version 0.6.0  , **however version 0.5.0 runs fine (complete run)**