Jin Seok (Andy) Lee

icon indicating a website link https://andyjslee.com/ icon indicating an email [email protected]

icon company University of North Carolina at Chapel Hill icon location United States icon location Bioinformatics and Computational Biology PhD Candidate in Personalized Immunotherapy Research Lab (PIRL)

Results 9 comments of Jin Seok (Andy) Lee

Different color for selected tab icon

I am also trying to do this, and it doesn't work either

plotting multiple panels

Thank you for developing such a useful package. It would be great if you could please implement what HannahVMeyer has suggested. I would like to merge the resulting plot from...

Translocation and Inversion

Thank you so much for your quick and detailed response. Based on your explanation, I've come up with small examples of each variant type. Would you say the following are...

CNV segmentation crash

Hello @XiaoTaoWang, I am having the same problem as @cmdoret.

CNV segmentation crash

Hello @XiaoTaoWang, thank you for your prompt response. My sample has around 670M contacts.

Low nhet and lcn.em NA issues

Is the number of segments given by nrow(oo$jointseg)?

mafR.clust is NA for all rows

Thank you for your response. Yes, you were right. I had used the wrong genome build. Could you please describe the difference between human_9606_b150_GRCh37p13 and human_9606_b151_GRCh37p13 (on ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/)? Also, what...

a problem when use vcfReader in loop

I have the same problem where if I iterate through records from vcf.Reader, then I lose all the data.

Request for fastq.gz read ID format change

@HalfPhoton yes, that's correct. Thank you!