Andrew Chen

Thanks! Just to add another possible location to look: My brew gcc ended up in `/opt/homebrew/Cellar/gcc/11.2.0_3/bin/gcc-11 ` This command worked for me (Mac OSX BigSur M1) `CC=/opt/homebrew/Cellar/gcc/11.2.0_3/bin/gcc-11 pip install velocyto`

Thanks! Feel free to close this issue. But on a related note what work do you think needs to be done to speed it up more? Would it be possible...

Thanks for working on this! If I was only interested in the rdkit mol objects, would I able to get even more speed by not doing the `Chem.MolToSmiles(...)` conversion on...

Would it be faster to use fingerprints to find duplicates instead of SMILE strings?

Ah realized I was supposed to put patient id in the sample slot not single cell ids... this was the final regression that I did. ``` sccomp_result = seurat |>...

Hi @lshep! I pushed changes to the devel branch on git.bioconductor.org (Thurs Nov 20 at 13:55) but haven't been able to see build reports on https://bioconductor.org/checkResults/devel/bioc-LATEST/. Not sure if I'm...

Hi @lshep, It seems like it builds cleanly, but there's 1 warning related to a tibble import (I think). Does it need to pass the check without warnings + notes?...

Thanks for the update! I just pushed a small commit to RELEASE_3_22 with what I think will fix the tibble warning. Commit `157ce44`.

Hi @lshep! The build for the above-mentioned latest commit didn't pass [link](https://bioconductor.org/checkResults/3.22/bioc-LATEST/hypeR/nebbiolo2-checksrc.html) but I believe that's because one of the databases it relies on ([Enrichr](https://maayanlab.cloud/Enrichr/)) is down (as of 1:30...

Hi @lshep! Commit `157ce44` re-ran and all the checks pass now as well! [latest](https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/). Let us know if there's anything further to be done for undeprecating the package! Thanks,