Andrew D Smith

icon indicating a website link http://smithlabresearch.org icon indicating an email [email protected]

icon company University of Southern California icon location Los Angeles

Results 3 issues of Andrew D Smith

Possible missing keys in esearch response results

1 comment

https://github.com/saketkc/pysradb/blob/0286ba9cf3d0f6e97b6d08baccf0bd36e11c650c/pysradb/sraweb.py#L340 I can't reproduce this, but I had a random event of: ``` File "/Users/aaaaaa/.venv/lib/python3.11/site-packages/pysradb/sraweb.py", line 339, in get_efetch_response n_records = int(esearch_response["esearchresult"]["count"]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ KeyError: 'count' ``` line numbers are off...

Failure of metadata

**Describe the bug** Failure of `metadata` on some SRA accessions when `VALUE` is not a key for `value_x`. **To Reproduce** ```console $ pysradb metadata --detailed ERP009821 Traceback (most recent call...

bug

Big composite and mb2

Adding proposed "bigComposite" with: - A cgi app to accept/construct cart updates while keeping them concise. - JS and CSS to make the controls page. - A definition for the...