andrewSharo

Results 6 comments of andrewSharo

Set minimum width for flow

@ricklupton This is several months old, but I am working on this project again and wanted to reply. Yes, the length of the black bars doesn't seem to match up...

Running outside of the install dir?

Hi Mvelinder, Thank you for this suggestion. I agree that it's currently limiting to force StrVCTVRE to be run in the install directory. I will look into implementing this feature...

mafToFastaStitcher compilation error

I'm getting the exact same error!

mafToFastaStitcher compilation error

Thanks @rsharris ! I can confirm that changing line 626 of mafToFastaStitcherAPI.c from char fmtName[10] = "\0", fmtStart[32] = "\0", fmtLen[32] = "\0", fmtSource[32] = "\0", *fmtLine = NULL; to...

Add population and frequency data?

I strongly agree! Because structural variants can be associated with recessive disorders, having allele frequency for these SVs is critical, just as it is for SNPs. Is there a timeline...

PE=0 for all SVs derived from 10X Long Ranger bams.

Hi Ryan, Normally, that would make sense to me, However I've also run this same bam through smoove (v0.2.5) and it finds plenty of PE evidence (although not a lot...