andreaboscutti
andreaboscutti
In the original version 'tokenize(strcat(fnam,fext))' returns the extension with the dot included (so for 'T1.mgz' -> '.mgz')., while the cases under switch only include the extension. The fix just extracts...
I have another potential suggestion regarding the ability to access sessions with more granularity. The img_filters=[('ses', '01')] works great, but in some instances, a user may want to select specific...
Hi, Thank you for the amazing work on generative models. I have a question regarding the generative model for Brain Imaging generation by @Warvito (https://github.com/Warvito/generative_brain). In the paper (https://arxiv.org/abs/2209.07162), what...
ThalamicNuclei segmentation naming conventions differ depending on the tool used: **If segmented with segmentThalamicNuclei.sh** - ThalamicNuclei."$thalver"."$analysisID".mgz default for "$thalver" is 'V13' (current version) and for "$analysisID" is 'T1' **If segmented...
When running segmentThalamicNuclei_DTI.sh, I encounter the following error: ``` ============================================================== Calculating DSWbeta DTI channels ============================================================== ====================================================== Error while running segmentation. Saving error struct. ====================================================== Index in position 4 exceeds array...
### **Add configurable thalamic nuclei filename** Currently, the script attempts to auto-detect thalamic nuclei segmentation files using hardcoded patterns. This is problematic because filename patterns vary by FreeSurfer version (v12,...