Anders Goncalves da Silva
Anders Goncalves da Silva
Just wondering if there is still active development on this project before I use it for my own docs. Thank you.
### Description: When working with any files that include Jinja2 templating, I miss out on the IDE completions and linting for Jinja2 and cause problems with the linting for the...
Adds a new tools called phcue-ck that gets FTP links to FASTQ from ENA. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If...
Bioconda now setups up a number of environment variables to correctly compile code on different platforms. To play nicely, and compile correctly, the Makefile should make use the LDFLAGS environmental...
Commenting out samples of the input file does not force a rerun of Roary.
Let's say I have a singularity container with all of TorstyVerse installed: `torstyverse.simg`. I can, for example, call `mlst` by: `/path/to/img/torstyverse.simg mlst`. Could a `--singularity-image` option be added that points...
In Nullarbor report, all the tool dependencies and their versions are listed. But, these include multiple assemblers, multiple species kmer-based identifiers, multiple tree building tools. It then becomes hard to...
To make a tree that matches up the abricate results, we need an abricate.tab for the reference.
There is a bug in generating the Makefile when using `nullarbor v1.30-dev` with `--assembler-opt` for the `again` target. `make again` generates a `nullarbor.pl` command that has stripped the quotes around...
For instance: MLST_REPORT_START ... MLST_REPORT_END ALN_START ... ALN_END etc... Or, in JSON format. This will make it easier to parse the report into a LIMs system or into R.