Alessandro Varani
Alessandro Varani
Hi there, This is not an issue, but a question Can I use the mega-reads as input for falcon-unzip, Hicanu (as hifi reads) and wtdbg2? This will may generate reliable...
Hi there, I'm trying to use the long-read integration but at the stringtie2fa.py stage the final mRNA file is empty, and I can't continue. Any idea? Here is the head...
It would be a nice feature to draw the structural features of transposable elements such as TIRs (Terminal invertead repeats), LTRs (Long Terminal Repeats), and TE related genes (polyproteins) in...
Hi there, I have made a guide to annotate plant TEs and reports generation, using a modified version of EDTA (full lineage annotation) together with AnnoSINE and mgescan nonltr and...
Hi there Any idea to solve the following issue ? .... [I::dump_links_from_bam_file] 658 million records processed, 213396899 read pairs [I::dump_links_from_bam_file] 659 million records processed, 213723963 read pairs [I::dump_links_from_bam_file] 660 million...
Hi there Is it possible to implement support for BED files along with BAM and PAIR formats? Best regards
Hi there, I'm facing the error below when running the "wgdi -c " command I'm using Ptrichocarpa from Phytozome blockinfo = Ptrichocarpa_Ptrichocarpa.blockinfo.csv lens1 = Ptrichocarpa.lens lens2 = Ptrichocarpa.lens tandem =...
Hi there! @sjteresi and @teresi , I'm trying to reproduce the figure 7 from the original manuscript. However, I was thinking in an simpler alternative for SynMap, like as MCscan...