amv33576

pseudoaln.bin and tmp.x.bam output files.

3

Hello, I am running kallisto 0.46.2 in a conda environment (Linux). I used the command: kallisto quant -i transcript.index -t 4 -b 2 --genomebam --gtf features.gtf --chromosomes chrm_size.txt -o sample...

chicViewpointBackgroundModel and `np.int` aliases deprecated in NumPy 1.20

7

Dear all, I am finding this problem when calculating a background model. Command in: chicQualityControl -m matrix.nr.h5 --referencePoints RFpoints.bed --sparsity 0.025 --threads 20 --outFileName new_RPs.bed chicViewpointBackgroundModel -m matrix.nr.h5 --fixateRange 500000...