amizeranschi
amizeranschi
Hi, I've just noticed that the first lines of the file `sequencing_adapters.fa` mention: ``` # This list was boostrapped from the FastQC contaminants.txt. # TODO: add missing Illumina adapters from...
Attempts to fix https://github.com/bcbio/bcbio-nextgen/issues/3670
Hello and many thanks for this library! By any chance, could you set up an Anaconda recipe for installing tf-keras-viz, as an alternative to pip? People recommend against mixing pip...
How are the y values (Peak Count Frequency) computed for the various peak profile plots? The shape of the curves looks like what I would expect for my samples, but...
This is not really an issue, but a feature request. It would be very helpful to add an option to covpot() to represent the chromosomes and their lengths, as well....
Hello, I've been testing `Intervene` on two of the sample tests. I've generated an UpSet plot and saved the corresponding BED files for the intersection and set differences and then...
Hi, I'm trying to align 7 genomes (between 700 Mb and 1 Gb each) on a 32-core machine with 128 GB of RAM. The job ran for several dies and...
### Description of feature Hi! I was trying out the `joint_germline` option, which produces a multi-sample VCF file from haplotypecaller. It would be helpful to have a similar feature for...
### Description of feature When running the pipeline with `--save_reference`, currently only the STAR index is saved. It would be useful to also include the Salmon and RSEM index inside...
### Description of feature Release announcement: https://ecogenomics.github.io/GTDBTk/announcements.html#gtdb-tk-2-4-0-available Path to reference data: https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/220.0/auxillary_files/gtdbtk_package/full_package/