Amir Shamaei

MR Spectroscopy DICOM file

1

Hi, Thank you for sharing your work. I was wondering if it is possible to support MR spectroscopy data. Best,

BUG: Complex data cast to float in get_fdata()

8

Hi all, I was wondering how nibabel deals with complex numbers. I tried to store complex data with a nifti library in java, then import it using nibabel. the original...

Couldn't log learning rate

2

I addded the following callback config to plot learning rate;however, nothing showed up. Could you please help me to show learning rate during training? ```javascript learning_rate_logger: _target_: lightning.pytorch.callbacks.LearningRateLogger logging_interval: 'step'...

Adding several loss (criteria)

1

Hi, I am working on adopting H+PL template for MRI reconstruction. I need to have several loss functions. What is the best routine for adding them to a PL module?...

Couldn't log with wandb

2

I successfully adopted the template. It runs smoothly. However, I cannot log in using WandB. I am new to WandB, but I set it up for my other project successfully...

VAE or VQ-VAE is needed

1

**Is your feature request related to a problem? Please describe.** Currently, the timm library lacks implementations for Variational Autoencoder (VAE) and Vector Quantized VAE (VQ-VAE) models. Users looking to utilize...

How to condition on an image?

3

I was wondering if it is possible to condition the input on an image? since the scale size is (B*dim) so how we can scale the input (B*L*dim) using an...

Normalized Root Mean Squared Error (NRMSE) Calculation

1

🚀 Feature Normalized Root Mean Squared Error (NRMSE) Calculation Motivation Calculating the Normalized Root Mean Squared Error (NRMSE) is a widely used metric in various fields, such as image processing,...

ask for pip

1

Hi, I was wondering if any version of this package is installable via pip?

CSI(MRSI) Data Conversion to nifti

2

- I am trying to convert Bruker CSI data to Nifti. Everything looks OK, except for the excited CSI grid. How I can store it in Nifti? Do you think...