Amir Kadivar

This issue really needs to be addressed since circos.js (as of current version 2.1.0) is unusable with browserify. ## The Issue As @iamtmrobinson points out circos.js does assume that it's...

This issue is deeply tied to the way that django treats static files in debug mode with `runserver`; django-wkhtmltopdf maintainers may be ok with not supporting this usage. A workaround...

I ran into a similar issue while making our local dev environments work (running in debug mode with `runserver`). I came up with a workaround that works that I have...

@wonjininfo thank you for looking into this. I also ran into the exact same issue described here and documented my findings in #153. I agree with @jambo6 that this is...

Along the same line, it would be more robust to use a drush command instead of `test -f /path/to/index.php` to check for an existing Drupal site.

For anyone else who might be blocked by this issue, here is my workaround until this issue is resolved in biopython. It copies `Entrez.read` as-is and sets the parsers directory...

@peterjc Also I think the relevant method `DataHandler._initialize_directory` seems to not honor the class attribute `local_dtd_dir`; it overwrites it with a path based on `self.directory`, see [code](https://github.com/biopython/biopython/blob/44ecbad7b2e847eb5de6d08e921078f61a15011a/Bio/Entrez/Parser.py#L980).

@peterjc To be clear, I have tried the solution you suggested (biopython version 1.73) and still get the same issue: the working directory ends up being whatever is referenced in...