amaralbc

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Just a quick add if that helps: I've tried to run pParse directly from cmd on the raw file, according to the instructions here: http://pfind.org/software/pParse/index.html It generates the .ms1 and...

That's great to know, looking forward to the new release! For this dataset I was only curious about identification numbers, but we have a few projects to evaluate precursor intensity...

Yep, same thing in all our computers.