Aman kumar singh

know about level sample compare result

3

I have direct-RNA sample nanopore data one is control and another is treated sample. So I just want to know the m6A modification in my treated sample. I used human_transcript.fasta...

find_circ.py show error

1

bowtie2 -q -U unmapped.fastq -x /Drive1/find_circ/index/bow2_homo --reorder --mm --very-sensitive --score-min=C,-15,0 | /home/aclab/apps/find_circ/find_circ.py -G /home/aclab/homo.fa -p homo --stats homo_sites.log --reads homo.fa >homo.bed [E::sam_parse1] query name too long [W::sam_read1] Parse error at...

CHEUI_preprocess_m5C.py give error

15

I successfully run the CHEUI_preprocess_m6A.py. but when I ran the CHEUI_preprocess_m5C.py script then the below error occurred. Can you please resolve this issue? Thanks in advance Here is the command...

Error in pipeline

4

I used your example data but it gives error: python ../IRESfinder.py -f example_mode_0.fa -o example_mode_0.result File "../IRESfinder.py", line 47 line = ids[i].strip() ^ TabError: inconsistent use of tabs and spaces...

Error in Nanopolish indexing

1

I am using the latest Dorado basecaller for basecalling, and I’ve noticed that the summary file it generates seems to differ from the one produced by Guppy. When I attempt...