Alyssa Frazee
Alyssa Frazee
Record exactly where each read came from and output flux-like BED file @buci
in particular, make _sure_ the first column of `pData` uniquely identifies replicates, or remove that requirement from (e.g.) `subset`.
see comment on https://github.com/alyssafrazee/ballgown/issues/59#issuecomment-92716681, currently this is kinda clunky.
MA plots, etc?
top level directory for the ctab files might not necessarily identify samples