aln
That would be an awesome feature!
I second this:) I had to analyze with FastQC after AfterQC, so I can aggregate with MultiQC. I think maybe adding issue to MultiQC repo can motivate authors to implement...
@gk-bioin4m8x Better to use different issues for different things. I was replying to the aggregation issue only.
multiqc report before any processing  multiqc report after AfterQC  [AfterQC report of one sample](https://github.com/OpenGene/AfterQC/files/970480/SRR3545898_1.fastq.gz.html.tar.gz) Also quick question, what would happen if...
Yes, which is weird. The original paper says: > KneadData. KneadData incorporates Trimmomatic and bowtie2 for filtering and human sequence removal, respectively. Reads were scanned with a four-base wide sliding...
I'm curious myself. It's not my article, I'm analyzing public dataset. Here is the [article](http://msystems.asm.org/content/1/3/e00018-16). Please, read the section "Shotgun library sequencing and quality control". But regarding sequencing protocol they...
Yes, I thought that the gaps are bubble related. That's how I found AfterQC, because I googled the tool, which can correct that. But AfterQC didn't find anything. So I...
UPDATE. For NexteraXT transposon protocol when the insert is shorter than the length of a single read it results in the presence of adapter at the end of the read....
Is this still planned? Or there is another way how to deploy it (similar to what mentioned in the post)?