Alina Dima

Blank renderer on remote server in a Jupyter notebook running in VS Code

22

### Describe the bug, what's wrong, and what you expected. I'm trying to render PyVista objects on a remote server. The code snippet below works as expected in a Jupyter...

https://github.com/BioMedIA/deepali/blob/ae3e4762a20cbbd0711cc5dd53a7f1aafad49b86/src/deepali/utils/imageio/nifti.py#L116 The Nifti saving function using nibabel here does not work because the affine matrix is incomplete. The output affine matrix from `grid.affine()` is 3x3 which is missing the origin/translation...