Alexander M Piper

Subsampling search results

1

Hi rentrez developers, I have a situation where i want to search for a taxa and specific gene, and only download a random subsample of these search results. ``` search_results

Hi, I am attempting to use GangSTR-2.5.0 and ive encountered a strange issue where the REF and ALT alelles in the output VCF are being reported as numbers rather than...

clustal_options variable for filter_seqs

2

Hi PrimerTree developers, I've come across a slight annoyance with the filter_seqs function, where if you have a custom clustal omega installation you will get an error: `Error in system(paste(exec,...

Feature request: Ability to use Genotype likelihoods

5

While most human population genomics datasets are now able to achieve >30x sequencing coverage on the regular, for a lot of non-model organism studies its becoming more popular to instead...

Hi, Ive encountered an issue with the get_gbif_taxonomy breaking when trying to resolve a synonymous genus. See below example: `traitdataform::get_gbif_taxonomy("Epiptera septentrionalis",subspecies = FALSE, verbose=TRUE, higherrank=FALSE, fuzzy=TRUE ,resolve_synonyms = TRUE )`...