alexjnoble

I anticipate that the current Relion scripts will be superseded by Topaz integration in the next official Relion release, version 3.2. So the current scripts will likely not be updated...

I have very little experience with Relion so I don't have a proper test case for this or other contributions. Perhaps @rfleiro can help with this?

Hello, This is currently the normal/expected behavior of the GUI. As Topaz GUI is based on VIA and that part of the code is quite convoluted, I have put in...

The VIA developers say this will be added in the next version. Stay tuned!

We would also like these features, but unfortunately we are not web or GUI developers. It took about a month to get the GUI to where it is from where...

Hi Takanori, Yes, we have basic Topaz-Relion integration wrappers for denoising and picking provided by a contributor that we are going to add once we test them. Once we add...

Hi Kevin, Sorry for the delay. There are scripts available here for use as Relion 3.1 plugins: https://github.com/tbepler/topaz/tree/master/relion_run_topaz The denoising scripts are complete. The picking scripts are still under development,...

Hi Lizelle, In our limited tests of training Topaz picking models on raw versus denoised micrographs, we do not see an improvement using denoised micrographs over raw micrographs. So you...