Alexis Lucattini

``` $ toil-cwl-runner --version 4.2.0 ```

My main problem was that `cwltool --make-template 2>/dev/null | yq eval --tojson '.' -` crashed, but don't have a strong preference on how it should be rendered. I would go...

> We need to fix the source of these root owned files, not ignore them and clutter the user's storage system. I don't think the source of the files are...

I think I've figured out the issue here (although I am not sure of the best solution). tl;dr it's basically docker being silly with nested mount paths. Why it's fine...

Hi @mr-c I'm a little confused, I have installed the latest version of cwltool and cannot reproduce your error. My `count-lines1-wf.cwl` shown above is from the [cwl-v1.1 repo](https://github.com/common-workflow-language/cwl-v1.1). All I...

Thanks @mr-c. Will look into this, might solve a lot of the workarounds that we're currently doing, particularly in terms of handling schemas for packed workflows through cwl-utils.

Related to: https://github.com/common-workflow-language/cwltool/issues/1436

I don't think in a correct implementation of the cwl engine that there is any issue with this other than not being generally consistent. I think I'm more concerned with...

Hi @matthdsm, There's a small discussion on this here: https://github.com/ewels/MultiQC/pull/1381#discussion_r660300270 I think for your use-case (each lane is being run exclusively), there's a sound argument as to why the undetermined...

> From the repo linked in [this comment](https://github.com/dracut-crypt-ssh/dracut-crypt-ssh/issues/34#issuecomment-560542214) (https://github.com/gsauthof/dracut-sshd). This works for me: > > * Remove `rd.neednet=1 ip=dhcp` from the bootloader options. > * Create a non-NetworkManager network config,...