Alexandre Coudray, PhD

Dear Sir or Madam, I just spent a lot of time trying to figure out why I could not make MuSiC2 to work, and it turned out that I was...

Here is the error : Downloading GitHub repo xuranw/MuSiC@HEAD MatrixModels (0.5-0 -> 0.5-1) [CRAN] rlang (1.0.2 -> 1.0.6) [CRAN] lifecycle (1.0.1 -> 1.0.3) [CRAN] cli (3.3.0 -> 3.4.1) [CRAN] vctrs...

Installation problem with error message ‘Matrix (>= 1.5.0)’ is not available

1

Hello ! I cannot install BayesPrism on R4.2.2 with the following error: Downloading GitHub repo Danko-Lab/BayesPrism@HEAD formatR (NA → 1.12 ) [CRAN] futile.op… (NA → 1.0.1 ) [CRAN] lambda.r (NA...

proper use of get.exp() function

1

Dear Sir or Madam, I am having trouble to get the matrix of cell-type expression from bayesprism output. I am trying to use : get.exp(bp.res, state.or.type="type") But the latter unfortunately...

Error in validObject(.Object): invalid class “prism” object: invalid key

1

Hello ! I just updated R to v.4.2, and now I downloaded the new BayesPrism (I had used the one in TED with Rv3.6.3 with no issues). When I try...

Popping Figure

1

Dear Sir or Madam, I am performing a benchmarking of deconvolution methods and I need to run TAPE and Scaden many times on multiple datasets. I wanted to know if...