Qi Song

icon indicating a website link https://sites.google.com/vt.edu/qinomics icon indicating an email [email protected]

icon company Carnegie Mellon University icon location Pittsburgh, PA icon location Postdoc at Carnegie Mellon University. Visit my personal website for more information: https://alexqisong.github.io/ or https://sites.google.com/vt.edu/qinomic

Results 8 comments of Qi Song

fail to run infer_trajectory

I had similar issue

fail to run infer_trajectory

> I had a similar problem that no model variable/object was returned. It seems that installing the package `hdf5r` solved my problem. Exactly, that works for me as well. My...

Label edges of trajectory

Hi, has this feature been added to the package? I would really look forward to having it. Thanks.

use of Seurat object

> Hi, > > can I use Seurat object (with UMAP/clustering already done) just to do the trajectory analysis ? > > thanks Hi Gebdu, Currently loading from Seurat object...

UI crashes with error "Error in [[<-: 0 elements in value to replace 103766 elements"

Hi Sciotlos, Thank you for your interest in scSTEM! I'm sorry for getting back to you late. It is weird that I did not receive GitHub notification email for new...

UI crashes with error "Error in [[<-: 0 elements in value to replace 103766 elements"

> Hello, > > I've tried scSTEM with both the sample data and my own data. After loading the data, I try to proceed to the UMAP step. However I...

Review of scSTEM repo

Thanks for the comments, very helpful!

Review of scSTEM repo

Thanks for the comments! Sorry to get back to this a bit late. Thank you, Alex ------ (Alex) Qi Song, Ph.D. Postdoctoral Associate Computational Biology Department School of Computer Science...