Andrey Rozenberg
Andrey Rozenberg
## Expected Behavior `hhconsensus` seems to be the recommended first step in converting MSA in `fasta` to `a3m` that allows to skip `reformat.pl` and thus would be expected to generate...
A feature request: would be very convenient to have an option to pipe into trimal: ``` my_pipe | trimal -in /dev/stdin ``` or ``` my_pipe | trimal -in - ```
Hi, AFAICT, MSFragger has no built-in way of addressing known single amino acid polymorphisms ([cf. x!tandem](https://thegpm.org/TANDEM/api/rsaps.html)). Is such an option on the agenda and/or it there a good workaround recommendation?...
Changing delimiter for uploaded CSV files has no effect. This is due to a bug in the code: the block if (input$file_type == "text") { data
* To provide the user with an option to control the order of factor levels a new function `data_preprocessing` is introduced. * Output image format is made adjustable.
Not sure what the root of the problem is, but it's impossible to submit any file on https://site.shinyserver.dck.gmw.rug.nl/ggplotgui/: file upload goes smoothly, but upon hitting the "Submit datafile" button the...
Arcs representing orthogonal components of the branches in the circular layout look very coarsely segmented with some trees. The effect is obviously particularly pronounced closer to the root: ````R library(ggtree)...
I do not entirely understand what is happening, but in some cases CDSs with ribosomal slippage from NCBI cause `double free or corruption (!prev)`: ``` $ gffread --version 0.12.7 $...
It would be very useful to have access to correspondences between output and input contigs: which contigs from which assemblies were fused. For example in fasta headers: ``` >contig0.1 trinity_1:c115_g5_i1...
Manual in md
Addresses https://github.com/brettc/partitionfinder/issues/113