Matthew Monroe

Fixed via https://github.com/PNNL-Comp-Mass-Spec/rdotnet/commit/1729c290a0c7fc790e933cfab9f5da8b9f7f658d You can find a compiled DLL in the "Inferno Source Code" file, downloadable from https://omics.pnl.gov/software/InfernoRDN Extract the .zip file, then extract the embedded .zip file, then search...

Thank you for adding `--header` That was my first question when I opened the default tab-delimited output: what are these 12 columns? My only feedback would be that the `#...

I'm saying it's odd that the header names are comma separated while the data itself is tab-separated. If it was me, instead of this ``` # DIAMOND v0.9.24. http://github.com/bbuchfink/diamond #...

I believe this functionality was added with commit ef28703e39d9d7f0e896b65f30c9d678323564c7 Download the latest release from https://github.com/bbuchfink/diamond/releases

I suspect the issue is too many dynamic modifications on the same residues, which leads to too many possible peptides to score. I suggest searching for those modifications separately. Search...

The latest update made Ctrl+Left Arrow and Ctrl+Right Arrow behave much more logically, by ignoring underscores (thank you!). Since you're actively implementing text editor improvements, please also consider implementing this...

Thank you for providing the .mzML file. We will look into this

That means that the spectrum did not have a good match. Examine the data for scans 1448 and 1479. I suspect they are sparse spectra with few ions above the...

It's surprising to me that there are several words in `words_alpha.txt` that are not in `words.txt` I noticed in the commit history adding true and false to `words_alpha.txt` and yet...

I can update our reader to allow you to set `IncludeReferenceAndExceptionData` to true. In order to test this, it would be beneficial if you could provide an example .raw file...