Kramdi Amira

Hi, I am here because I've encountered the exact same error with my data. In my case, setting `num_workers` to 1 did not work either (it results in the same...

Hi @andrewni4313 Here's my fix for this issue. I found that this error is caused by a failure of one of the two methods used to drive the threshold for...

Hi Evan, I understand. I'll take a look at `pagoda2`. Thanks for the links and code ! I'll carry on then and will let you know if I'm confronted with...

Hi, I have the same issue: ``` sobj

Well, I was able to spot the code that causes the error in ` as.Seurat` function: https://github.com/satijalab/seurat-wrappers/blob/156e3925eec2a9180d76602d09b09a3eafb738e8/R/conos.R#L75-L80 Precisely in line 79: > object[[graph]] colnames(object) %>% head() [1] "AAACCCAAGGCGTCCT_1" "AAACCCACAACAGCCC_1" "AAACGAAAGCTTGTTG_1"...

I actually forgot to check/fix duplicated cell names across samples before Conos integration... For anyone with the same issue, here's how I fixed it (I used `CheckDuplicateCellNames` from Seurat): ```...