Anisha Keshavan
Anisha Keshavan
## Summary Attempts to fix https://github.com/nipy/nipype/issues/948 -- its 4 years later and we are still having this problem! I slightly modified @oesteban 's original commit with a flag called `checksize`,...
Don't merge yet! I just want you all to see what's in progress
suggested by @satra
for some odd reason `img.get_fdata` kills my python kernel, but the deprecated `get_data` does not. I'm not sure how to debug this because everything just dies!
the HBN fieldmap files aren't consistently in BIDS format -- for the files where we have to read the .json file to figure out the fieldmap direction, we need to...
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddyqc/UsersGuide
we need to add anatomical processing if freesurfer hasn't been run. Let's use the same one as fmriprep: https://github.com/poldracklab/fmriprep/blob/master/fmriprep/workflows/base.py#L409-L466
Add the suggestions from https://neurostars.org/t/dmriprep-an-fmriprep-for-diffusion/2385/8 to the QC report
* in BIDS format * cases without T1s and with T1s, without AP/PA and with