Apoorva Kelkar

Thank you for the suggestions. I gave the mask image for the moving image with this updated command: antsRegistrationSyn.sh -d 3 -f ${fixedImage} -m ${movingImage} -x NULL,${maskImage_moving} -o T1wtob0 The...

So sorry about the code readout. I will add it in the single backquotes. When I give the `-x [ NULL,${maskImage_moving} ]` in the code, it gives me an itk...

Thank you so much for your suggestions Dr. Cook. Sorry, took me a while to implement them. I tried them but the registration seems to look better only for the...

The sulcal and gyral boundaries of the two images align well with each other. Thank you for the resources @gdevenyi. I will go through them

Hi, I am just reaching out to confirm the PEPOLAR Pipeline can handle both use cases noted above? Your feedback is appreciated. Thank you Best, Apoorva

Hi @dorianps , Hope you are well. As suggested, I installed an older version of R - R 4.2.2 I am however getting a different error now: `library(LINDA) Warning messages:...

Hi Dorian, The first solution you suggested didn't work and gave the same error. However, the docker container worked great! Thank you so much for all your help with this....

Hi, I am also running into this issue. Do I need to extract the sub-elements with the above code for each scan and put it in the .tsv file?

Thank you so much @yarikoptic and @neurolabusc for looking into this. Please let me know if you need any dicom samples from my end. Also, please let me know the...

Thank you so much for the public data. @yarikoptic unfortunately, I don't have the permissions from our collaborators to share the data I am using. I would like to mention...