Andre Kahles

Dear Alan, Apologies for the late reply. You hit us during vacation season. Also thank you for the detailed report and the example case. We will have a look at...

Thanks for pointing this out. There was a bug in selecting the plotting range which came to light when you used the very tiny example data. I have implemented a...

Thanks a lot for reporting this. I have difficulty reproducing the issue. Would one of you be able to provide a minimal failing example? This would greatly speed up the...

Dear all, thanks for the valuable feedback. One of the currently slowest parts in the pipeline is the progressive merging of individual single-sample graphs, which is hard to parallelize over...

Dear @avrajit , The command as shown just visualizes the alternative event. In your case this is an exon skip. Shown are the inclusion and the exclusion path of the...

Dear @zyh4482 , sorry for the late reply. Is this issue still relevant for you? Did you try running the test with a smaller subset of samples? Thanks, Andre

Dear @sckinta, Thank you very much for reaching out and for using SplAdder. The re-quantification of existing events on new input files is currently not supported by SplAdder. I understand...

Hi Pauline, the code in this repository is the documentation of analyses that were carried out in the paper. It is not directly runnable within a new environment. For instance,...

I see your point. I will try to make these scripts/tools available soon, if possible. I just have to get into contact with the other authors first. Cheers, Andre

Dear @geejaytee , Thank you very much for trying out SplAdder. I do agree, that the current choice of colours for visualisation is sub-optimal. My plan is to improve this...