Anurag Vaidya

icon location I am a doctoral candidate at the Harvard-MIT Health Science and Technology program. I am broadly interested in applying machine learning to healthcare settings.

Results 7 comments of Anurag Vaidya

Question about CategoryValueEncoder and ContinuousValueEncoder for value encoder

+1

Reactome Data Source

It is unfortunate that the link is broken as we used that link while working on this project. Thanks for sharing a replacement link with the community! Another source is...

5-Fold CV split Implementation

Yes, you are correct that the name of the case has the tissue source site in it. However, there can be 70+ sites in some cohorts. So, we used [Howard...

Generalization to another anatomical sites

Hi @PabloMeseguerEsbri, thanks for your interest in our work. 1. MADELEINE is trained on breast cancer/kidney rejection, so it may not generalize well to sites like lung (as it does...

TCGA data application

Thanks for your interest in our work. We provide UNI patch embeddings and associated RNA profiles as `.pt` files for `TCGA-BRCA` at this [LINK](https://drive.google.com/drive/folders/1GIJEITf5-7lFKil7Dfi3sSmVFgzh-otv). Please let us know if you...

TCGA data application

At this point, we are not able to share it for the entire TCGA cohort.

How the KM curve is drawn？

We do not provide the code for drawing KM curves as it is pretty standard code from [lifelines](https://lifelines.readthedocs.io/en/latest/fitters/univariate/KaplanMeierFitter.html). However, here's an overview of the process. We first use the model...